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The number of notable protein-ligand docking programs currently available is high and has been steadily increasing over the last decades. The following list presents an overview of the most common notable programs, listed alphabetically, with indication of the corresponding year of publication, involved organisation or institution, short description, availability of a webservice and the license.
AutoDock is a molecular modeling simulation software. It is especially effective for protein-ligand docking. AutoDock 4 is available under the GNU General Public License. AutoDock is one of the most cited docking software applications in the research community. [ 1] It is used by the FightAIDS@Home and OpenPandemics - COVID-19 projects run at ...
Website. www .lephar .com /software .html. LeDock is a molecular docking software, designed for protein- ligand interactions, that is compatible with Linux, macOS, and Windows. [ 2][ 3][ 4] The software can run as a standalone programme or from Jupyter Notebook. [ 5] It supports the Tripos Mol2 file format.
The USB 3.x family has had the same technical notation retroactively added in the USB 3.1 and USB 3.2 specification versions. Though this shows common principles and the same generations refer to the same nominal speeds, "Gen A" does not have the same exact meaning in both USB 3.x and USB4 specifications.
Comparison of software for molecular mechanics modeling. This is a list of computer programs that are predominantly used for molecular mechanics calculations. GPU – GPU accelerated. I – Has interface. Imp – Implicit water. MC – Monte Carlo. MD – Molecular dynamics. Min – Optimization. QM – Quantum mechanics.
OpenEye Scientific Software is an American software company founded by Anthony Nicholls in 1997. [1] It develops large-scale molecular modelling applications and toolkits . Following OpenEye's acquisition by Cadence Design Systems for $500 million in September 2022, the company was rebranded to OpenEye Cadence Molecular Sciences and operates as ...
List of dock applications. The following is a list of dock applications . Shareware Dock replacement for OS X with many features. Customizable dock with support for plugins and skins. Copy of the OS X dock for Windows offered in both Freeware and Shareware forms. Support for docklets (plugins). Copy of the OS X dock for Windows.
Software protection dongle. A software protection dongle (commonly known as a dongle or key) is an electronic copy protection and content protection device. When connected to a computer or other electronics, they unlock software functionality or decode content. [ 1] The hardware key is programmed with a product key or other cryptographic ...