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  2. SBML - Wikipedia

    en.wikipedia.org/wiki/SBML

    sbml .org. The Systems Biology Markup Language ( SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. [1] It is a free and open standard with widespread software support and a community of users and developers. SBML can represent many different classes of biological ...

  3. The Code Breaker - Wikipedia

    en.wikipedia.org/wiki/The_Code_Breaker

    The Code Breaker: Jennifer Doudna, Gene Editing, and the Future of the Human Race is a non-fiction book authored by American historian and journalist Walter Isaacson. Published in March 2021 by Simon & Schuster , it is a biography of Jennifer Doudna , the winner of the 2020 Nobel Prize in Chemistry for her work on the CRISPR system of gene ...

  4. FASTA format - Wikipedia

    en.wikipedia.org/wiki/FASTA_format

    FASTA format. In bioinformatics and biochemistry, the FASTA format is a text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented using single-letter codes. The format allows for sequence names and comments to precede the sequences.

  5. FASTQ format - Wikipedia

    en.wikipedia.org/wiki/FASTQ_format

    Website. maq .sourceforge .net /fastq .shtml. FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a single ASCII character for brevity.

  6. Biopython - Wikipedia

    en.wikipedia.org/wiki/Biopython

    The initial scope of Biopython involved accessing, indexing and processing biological sequence files. While this is still a major focus, over the following years added modules have extended its functionality to cover additional areas of biology (see Key features and examples ). As of version 1.77, Biopython no longer supports Python 2.

  7. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Open Bioinformatics Foundation. BioPHP. PHP language toolkit with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools. Cross-platform. GPL v2. Open Bioinformatics Foundation. Biopython. Python language toolkit. Cross-platform.

  8. EMBOSS - Wikipedia

    en.wikipedia.org/wiki/EMBOSS

    EMBOSS is a free c software analysis package developed for the needs of the molecular biology and bioinformatics user community. [1] The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform ...

  9. List of PDF software - Wikipedia

    en.wikipedia.org/wiki/List_of_PDF_software

    Free ( Mozilla Public License) an Office suite; allows to export (and import, with accuracy limitations) PDF files. Microsoft Word 2013. Proprietary. Desktop software. The 2013 edition of Office allows PDF files to be converted into a format that can be edited. Nitro PDF Reader. Trialware.